Revise the JFM research workflow documentation to clarify project structure, decision-making processes, and tool routing. Remove outdated figures and images that are no longer relevant to the current manuscript. Ensure that the workflow aligns with the latest research objectives and safety protocols.
23 KiB
Round 4 style synthesis and Round-5 crosswalk
Role: historical Gate-A audit of the original ten style memos; its style findings are progressively integrated into active SECTION_*.md files, and parallel style memos are deleted after integration. This is style/architecture control, not manuscript prose, scientific evidence, artifact approval, or a section freeze.
Overall result: PASS for global style synthesis. The historical Gate-A audit remains below; the 2026-08-11 paragraph-level enrichment in all ten active section packets is now consolidated into the operational Round-5 protocol without changing science or readiness.
1. Scope and complete coverage ledger
read is not independently verified or artifact-audited. mapped is not read. External literature is style evidence only; internal claims remain controlled by repository authorities, manifests, immutable artifacts, the Round-2 freeze, and audited Round-3 dossiers.
| State | Inputs | Boundary |
|---|---|---|
read |
All Round-4 controls: README.md, 00_MASTER_AGENT_PROMPT.md, 00_GLOBAL_DECISION_LEDGER.md, 00_DISPLAY_EQUATION_INVENTORY.md, 00_QUALITY_GATE.md |
Complete workflow/decision control set; not scientific verification |
read |
All ten style memos, each in full | Style observations, recommendations, identities/read levels, interfaces and anti-patterns; no memo is internal scientific authority |
read |
R2 05_REVISED_STRUCTURE_FREEZE.md, 06_SECTION_LEVEL_JFM_STYLE_GUIDE.md |
Author-ratified architecture/claims and controlling style synthesis |
read |
R3 00_MODULE_INTERFACE_LEDGER.md, 00_QUALITY_GATE.md, 11_FINAL_CONSISTENCY_AUDIT.md |
Readiness, ownership, near-collisions, blockers and assembly controls; no recomputation |
mapped |
R3 Modules 01–10; authorities/manifests/artifacts they name |
Scientific detail remains with its owner; no mapped item is promoted to read or verified |
mapped |
Literature records declared by the memos/R2 guide | Identity/read-level audit only; no new literature search or PDF reading |
not-covered |
New literature; raw arrays/hashes; CFD, training, SR, CCD or OID recomputation; experiment analysis; figures; manuscript drafting | Outside Gate A; no citation, internal number, panel, or prose inferred |
external-inaccessible |
Hidden/symlink payloads, model bundles, dense fields/theory arrays, raw experiment media | Authority-led artifact deferral; retained dependent panels/claims remain gated |
Observed comparator order, cadence and caveat practice come from the memos' declared full-PDF, full-report, mapped, or abstract/snippet literature states. Project scope, terminology, results and readiness come only from internal controls and owning authorities.
2. Gate-A result by memo
| Integrated owner | Result | Exact reason | Targeted correction |
|---|---|---|---|
SECTION_01_INTRODUCTION_FREEZE.md |
PASS | Current owner of the integrated Introduction architecture and former Style-01 findings | Deleted STYLE_01_INTRODUCTION.md is historical/superseded provenance only |
SECTION_02_PROBLEM_METHOD_EVALUATION.md |
PASS | Current owner of the integrated method/evaluation architecture and former Style-02 findings | Deleted STYLE_02_CONTRACTS_METRICS.md is historical/superseded provenance only |
SECTION_03_CAPABILITY_PROGRESSION.md |
PASS | The former Style-03 findings, four exact identities/DOIs/read levels, comparator-led visual hierarchy, caption/body division, local limits, anti-patterns and fallbacks are integrated into the active Section file; the parallel style memo was deleted | None; publication-size event-sequence choice remains discuss |
SECTION_04_KARMAN_RESULTS.md |
PASS | The former Style-04 findings, four exact identities/DOIs/read levels, comparator-led escalation, field/signal separation, caption practice and anti-patterns are integrated into the active Section file; the parallel style memo was deleted. Current author feedback replaces the old retention emphasis with five-realization high-performance discovery | None; final two-figure density choices remain discuss |
SECTION_05_KARMAN_SR_LAW.md |
PASS | Gate-A style research passed: required R2/R3 controls were read, and panel status, ownership and Kármán/cloak-only scope were reconciled without changing the claim ceiling; these findings were integrated into the Section file and the parallel style memo was deleted | None; targeted controlling-read correction verified |
SECTION_06_KARMAN_FIELD_CCD.md |
PASS | Gate-A style research passed: three exact full-PDF identities plus one exact mapped/inaccessible record; read levels are not inflated; mean-before-modes, non-pairing, fixed terminology, POD boundary and M04/M06 separation remain explicit; these findings were integrated into the Section file and the parallel style memo was deleted | None; keep Noack et al. (2016) mapped unless full text is read |
SECTION_07_CROSS_CASE_EXTENSIONS.md |
PASS | Gate-A style research passed and was integrated with the author-corrected changed-contract architecture, actual Vortex/Illusion/Erase data audit, evidence boundaries and two-figure production interface; the parallel style memo was deleted | None; retain event-relative semantics, local comparators and strict non-transfer boundaries |
SECTION_08_STEADY_THEORY.md |
PASS | Gate-A style research and author feedback were integrated into the Section file: finite-Re observation, improved kinematics-first physical hypothesis, prescribed-circulation outer solution, streamline display and failed sign/closure route remain distinct; the parallel style memo was deleted | None; retain outer-reference status and finite-Re mechanism ceiling |
SECTION_09_EXPERIMENT.md |
PASS | Gate-A style research passed and was integrated: experiment media retain explicit author-supply gates and prose/omission fallbacks, with no observation promoted before provenance closes; the parallel style memo was deleted | None; retain author-supply gating, prose/omission fallback and no-observation-promotion ceiling |
SECTION_10_DISCUSSION_CONCLUSION.md |
PASS | Gate-A style research passed and was integrated: exact Deng et al. and Cornejo Maceda literature identities were corrected, and the evidence-order/separate-Discussion-and-Conclusion rationale was retained; the current author instruction supersedes the former limitations/future-work design, and the parallel style memo was deleted | None; retain exact identities and the evidence-order/split rationale without restoring limitations or future-work design |
No memo uses literature to establish an internal result, and no memo invents a new internal number. The corrected defects were limited to exact identity and control-coverage bookkeeping; they do not alter scientific claims.
3. Shared versus section-specific JFM practice
Shared observed practice
- A target, baseline, reference role or simpler controller is legible before interpretation; extensions renew comparators locally.
- Evidence escalates from contract to principal result to richer spatial/modal interpretation; strong vocabulary follows dedicated tests.
- One paragraph and one display normally carry one main argumentative job.
- Captions decode roles, conditions and panels; body text states inference, limit and consequence.
- Dangerous limitations sit beside affected results and may be compressed again in Discussion.
- Equations define immediately/repeatedly used objects; figures carry empirical burden; tables compress contracts or comparable rows.
- Bridges pose the unresolved scientific question rather than announce a section number.
- Negative routes remain visible to motivate refinement or define the envelope.
Section-specific practice
- Introduction: compact funnel; clustered citations; no equations or detailed project results; subsections only for genuine taxonomy.
- Contracts: dependency order from plant/baseline through objective, metrics and qualification; tables expose contract shifts.
- Capability: one dominant comparator-bearing case anchors breadth; panel order/area express hierarchy; no common score.
- Performance: exact comparator and principal result precede interpretation; field and signal estimands stay separate.
- SR: variables, objective and deployment precede law; execution arbitrates; deletion is not causal ablation.
- Field/CCD: mean/scalar estimand precedes residual/modes; POD is a same-object boundary, not a superiority foil.
- Cross-case: change one contract dimension where possible; renew comparator; label visual-only and negative evidence locally.
- Steady/theory: late context is narrower than a second climax; attractive theory and failed sign/closure stay adjacent.
- Experiment: apparatus/acquisition/provenance precede qualitative observation; omit media when provenance fails.
- Discussion/Conclusion: complete interpretation before the short close and synthesize only established answers in evidence order. Limitations/outlook are optional, visibly author-owned, and outside the current synthesis architecture.
4. Global Round-4 rules to freeze
- Comparator-first: bind target, controlled role, physical zero/baseline, chain and estimand before inference.
- Evidence escalation: named capability → Legacy Kármán independent field evaluation → bounded Kármán/cloak-only interpretation; cross-cases do not inherit deeper levels.
- Local caveats: put mask/window, acquisition, causal, transfer, theory and provenance limits with the affected sentence/caption.
- One job per paragraph: delete package chronology, inventory prose and panel narration.
- Ownership: Section 2 owns reusable definitions; Capability Fig. 1/progression; Performance detailed reference-case L2/DTW; SR deployment/law/deletion; Field/CCD corrected means/residual/modes/POD; Cross-case changed-contract extensions; Steady/theory separate-chain endpoint/sign/failure; Experiment provenance/observation; Conclusion text-only synthesis and no new evidence.
- Caption/body division: caption states chain, case/role, comparator, metric/coordinate, source and ceiling; body explains inferential consequence.
- Display discipline: inventory never means existence. Every retained display needs owner, job, source, readiness, caption ceiling and fallback; text and artifact readiness stay separate.
- Equation discipline: freeze reusable notation once; do not duplicate owner equations; Conclusion has none.
- Bridges: gap → contracts → capability → independent Kármán evaluation → law complexity → field accounting → non-transfer → steady context → qualitative deployability → established synthesis.
- Claim ceilings: positive SR Kármán/cloak only; Illusion SR historical/negative; CCD descriptive/noncausal using exactly action-correlated correction-field modes; OID claim-free; steady contextual; experiment qualitative, open-loop and provenance-gated.
- Notation/chain: preserve
Kármán,Re_D,Re_code, spatial L2 versus Level/Stage, DTW orientation, action order/sign, ROI/mask/window and percentages. Legacy/V5 never pool, continue, validate or imply equivalence. - Metric boundary: periodic mean/phase, event-relative, mean-only, steady profile/
E_inf_vector, and native/normalized DTW are non-equivalent. M04/M06 means are different estimands; SR action magnitude/V5 spin are related contextual diagnostics only.
5. Author decisions for macro discussion (maximum five)
- Figure density and main/supplement split. Recommend the minimum argumentative main set; move derivations, qualification matrices and optional diagnostics to supplement; omit before crowding. Decide final Fig. 1 panels and optional Re400/limit markers.
- Gated displays. Recommend omitting standardized PPO/SR/zero, quantitative Vortex/Erase, and MFS field panels unless exact gates close. Treat CCD operator/POD choices as coordinator production recommendations; the evidence-map proposal is superseded and is not an open decision.
- Experiment inclusion. Retain a short author-owned subsection only if provenance supports a named qualitative observation; otherwise use a limit/interface sentence and omit media. Quantitative validation remains prohibited.
- Discussion/Conclusion structure. Retain the accepted integrated Discussion followed by a distinct short Conclusion; no one-section fallback remains active.
- Introduction freeze and title. Freeze Introduction last; retain the provisional title unless reopened. Any title change triggers terminology/claim audit.
6. Section-specific crosswalk
| Section | Recommended sequence | Primary display contract | Ownership | Main fallback |
|---|---|---|---|---|
| Introduction | concept/boundary → difficulty → capability/gap → evidence-chain need → scope/bridge | No owned empirical display; optional prospective Fig. 1 reference | Full ladder, concept, gap, scope | No display; five-job funnel |
| Contracts | comparison need → plant/chain → action/sign → observation/objective → metrics/roles/windows → qualification | Required contract table + minimal schematic; reusable metric equations | Reusable definitions and qualification | Compact table/schematic; supplement detail |
| Capability | viewing contract → steady seed → dominant Kármán → bounded extensions → limit/deep-case selection | Kármán-dominant distinct-contract Fig. 1 | Progression, evidence levels, deep-case choice | Source-bound panels only or prose |
| Performance | tested conditions and repeated learning → exact deep-case field comparison → mean/phase L2 → signal/action organization → SR question | Two figures: integrated condition/learning map and L2-first reference-case display | Condition range, five learning histories, detailed deep-case L2/DTW and PPO action/sensor evidence | Move disturbance-size group and spectrum/DTW detail to supplement |
| SR | surrogate boundary → deployment → law → execution → deletion → field question | Required deployment map/law/deletion; direct role panel gated | Executable law, imposed structure, arbitration, tested deletion | Equations + deletion table |
| Field/CCD | four roles → means/ledger → limit → residual → CCD → POD boundary | Mean before modes; residual equation required; CCD operator optional | Corrected means, residual, descriptive modes, POD boundary | Scalar ledger + residual equation |
| Cross-case | framing → event-relative → non-zero target → blocked/failure route → envelope | Distinct-contract display; quantitative Vortex/Erase gated | Comparator renewal, evidence levels, negative routes | Case-contract table + sourced visuals |
| Steady/theory | return → V5 endpoint → bounded description → outer reference/failure → export | Sign contract and failure required; endpoint gated; MFS blocked | Separate-chain endpoint/sign/context/theory failure | Sign schematic + endpoint table + trace |
| Experiment | purpose → apparatus/provenance → qualitative comparison → limit/test | Author-supply-gated media; no quantitative panel/equation | Frank-owned provenance and observation | Prose interface or omission |
| Discussion/Conclusion | breadth-to-depth → bounded interpretation → short close | No conclusion display/equation/citation/number | Integrated established answer only | Text-only synthesis; optional author-owned limitations/outlook outside frozen synthesis |
7. Macro-discussion input
Author-ratified decisions carried forward
- Assembled order: Introduction → contracts → capability → Kármán performance → SR → field/CCD → cross-case → steady/theory → experiment → Discussion/Conclusion.
- Freeze order: contracts → capability → Kármán performance → SR → field/CCD → cross-case → steady/theory → experiment → Discussion/Conclusion → Introduction last.
- Claim ladder: named cross-task capability; independent field matching for the reference periodic Kármán cloak case in the parabolic-inflow/no-slip-wall channel configuration; bounded Kármán/cloak-only control-skeleton interpretation. The internal source label remains provenance only.
- Historical planning shares: Introduction 10%, contracts 13%, capability 11%, Kármán performance 12%, SR 17%, field/CCD 17%, cross-case 10%, steady/theory 6%, experiment/limitations/conclusion 4%. This is a superseded R2 allocation record, not an active requirement for a limitations unit and not a new measurement.
- Physical chronology: steady discovery → Kármán → Vortex → Illusion/Erase → qualitative experiment, with steady as an early seed and later contextual return.
Coordinator recommendation; not author-ratified
- Preserve both orders and keep SR, field/CCD, capability and cross-case as distinct ownership units.
- Protect the Kármán block as the analytical centre; cross-case and steady define breadth/boundaries, not competing interpretation.
- Apply the claim ladder sentence by sentence; interpretation remains Kármán/cloak-only and noncausal.
- Retain the minimum display inventory: method table/schematic; Kármán-dominant Fig. 1; Kármán performance; SR law/deletion; mean then residual/CCD; bounded cross-case role-field display/table; steady sign/endpoint/failure; provenance-gated experiment if available. Conclusion has no display. Optional operators, insets, maps and blocked panels are drop-first.
- Retain the minimum equation inventory: reusable definitions in Contracts; SR deployment/law; scalar identity only if retained plus residual in Field/CCD; event equation only with a retained quantitative result; steady definition only if not imported plus one outer-reference boundary. Full derivations go to supplement.
- Keep result ownership exclusive: previews name conclusions without values; owners carry exact comparisons; Discussion compresses without replay.
These recommendations remain discuss until recorded as author decisions; they do not become frozen by appearing here.
8. Handoff and quality gate
- Present the five decision bundles to the author for macro discussion; record decisions or safe omissions in the global ledger. Do not falsely freeze unresolved choices.
- Freeze architecture only when ownership, bridges, ladder, notation, space and display/equation inventory agree. Optional panels may remain gated; retained required panels with missing source or roles remain unavailable.
- For section freezes, reread the owning R3 dossier and current authorities, not only this crosswalk; current Sections 1/2 replace deleted Style 01/02 as active reads; run local near-collision and caption-ceiling checks and require coordinator second audit.
- Before Round 5, audit
Kármán, Legacy/V5,Re_D/Re_code, spatial L2 versus Level/Stage, DTW orientation, action order/sign, ROI/mask/window, percentages, equation ownership, duplicate detail and whitespace.
Gate-A handoff: the ten-memo style set is PASS and ready for macro discussion through the five author-decision bundles. Optional display dependencies and later section-freeze checks retain their recorded gates. No manuscript prose, literature, internal number, artifact or panel is created by this audit.
9. Final paragraph-enrichment synthesis and authority — 2026-08-11
Authority and supersession
The dated 2026-08-11 paragraph-level enrichment blocks in SECTION_01–SECTION_10 are the current section-local owners of paper identities, read states, paragraph-specific observations, local wording ladders, caveats, captions and anti-patterns. They supersede the corresponding globalized recommendations in the Round-2 style guide and this file wherever a section packet is more specific. The Round-2 structure freeze still controls author-ratified architecture where not superseded by recorded Round-4 author decisions; 00_GLOBAL_DECISION_LEDGER.md controls Round-4 architecture, ownership, claim and supersession conflicts. The global .cursor/rules/jfm-writing-style.mdc contains only recurring Round-5 operations. It does not replace a section packet, establish evidence or carry paper lists.
Cross-section contracts extracted from all five dual-section enrichments
| Recurring contract | Section-enrichment mapping | Global Round-5 operation |
|---|---|---|
| Paragraph move | S1–S2 define before inference; S3–S4 comparator and principal result before diagnostics; S5–S6 object/equation before execution or modes; S7–S8 renew changed contracts and keep failed routes adjacent; S9–S10 comparator/provenance before observation and synthesis in earned evidence order | One job; claim/question → comparator/definition → evidence → interpretation → local caveat → consequence/bridge |
| Evidence and citations | Every pair separates repository-owned internal statements from literature-owned rhetorical/context statements | Cite the external proposition only; never use literature to certify an internal result, value, artifact or readiness; retain source-state labels |
| Caveat timing and wording | Acquisition, metric, non-pairing, intervention, evaluator, theory-closure and provenance limits repeatedly sit beside the attractive result | Green direct; amber only with named test and adjacent condition; red prohibited without dedicated authority/test; no terminal disclaimer repair |
| Caption/body division | Across field, signal, modal, theory and experiment displays, captions decode conditions and provenance while body states inference | Caption: configuration/roles/variable/coordinate/window/metric/source/local ceiling; body: comparison/inference/limit/consequence |
| Equation/display discipline | S1/S9/S10 prohibit equations; S2 owns reusable definitions; S5/S6/S8 place only immediately used owner equations; all packets separate inventory from readiness | Define once with symbols/units/sign/domain; keep beside dependent evidence; no decorative duplication; require owner/source/readiness/fallback for displays |
| Transitions | Every pair converts the established result into the next scientific question and preserves the manuscript interface | Scientific bridge, never section/package announcement; previews do not steal owner detail and synthesis does not replay it |
| Anti-patterns | All pairs reject catalogues, chronology, panel narration, generic AI prose, metric pooling, delayed caveats and unsupported strong verbs | Run the anti-AI and paragraph self-audit in the global rule before accepting each paragraph |
Section-local material deliberately not globalized
Paper identities and DOIs, paragraph-by-paragraph support sets, exact values, local role order exceptions, individual captions, figure compositions, equation choices, production defaults and case-specific green/amber/red phrases remain in their owning section packets. This prevents a paper catalogue or local scientific constraint from becoming a false manuscript-wide convention.
Round-5 handoff
The global writing rule operationalizes these recurring contracts. Round 5 must read the owning R4 packet first, then use this crosswalk for manuscript-wide consistency. A global PASS here does not change discuss, author-interface, dependency-gated or blocked statuses and does not approve any artifact.