Revise the JFM research workflow documentation to clarify project structure, decision-making processes, and tool routing. Remove outdated figures and images that are no longer relevant to the current manuscript. Ensure that the workflow aligns with the latest research objectives and safety protocols.
3.9 KiB
3.9 KiB
Round 4/5 Quality Gate
Round 4 freezes author-facing arguments and section designs; Round 5 drafts from those freezes. Neither round creates evidence. Decision value and manuscript design outrank procedural volume.
Entry gate — coordinator packet
- Exact unit, round, output decision and file are named.
- Exact controlling reads and accepted dated author feedback are listed.
- Available material/artifact inventory distinguishes text-, data-, script-, panel- and dependency-readiness.
- Target words/pages and section/manuscript share are stated.
- Paragraph jobs and closing bridge form an argument, not an inventory.
- Concrete display layout gives count, panel geometry, placement, job, owner, source, readiness and fallback.
- Imports, exports, exclusions and exact bounded questions are explicit.
A subagent failing this gate is not launched to rediscover the project.
Process gate — continuation and routing
- When prior decisions matter, agent begins with targeted Nowledge memory/thread recall, then verifies against repository authorities; memory never overrides artifacts.
- Repository tools handle internal evidence. Undermind is literature-only after
get_orientationandlist_workspaces. - Read-only scripts/derivations use a designated conda environment discovered from authority/listing; no environment is guessed.
- No CFD, training, artifact generation or expensive analysis ran without authorization.
- Coverage ledger is compact and limited to controlling reads/gaps (
read,mapped,not-covered,external-inaccessible).
Section design/freeze gate
- Recommendation answers the exact author-facing question and explains consequence/trade-off.
- Length/share, paragraph progression, display cadence and evidence density are credible.
- Claims retain owner, chain/configuration, Reynolds convention, role, comparator, metric/estimand, ROI/window and authority.
- Imports stay brief; exports and deletion owners prevent duplication.
- Displays/equations state what they establish and do not establish; text readiness is separate from artifact readiness.
- Author choices remain
discuss/blockedor receive an accepted decision; safe defaults are not falsely frozen. - Kan99b K2 stays exactly
partial pass; the mean-lift sign difference is attributed to CFD coordinate/force-direction convention, never unresolved physics or suspected wrong rotation. - Fixed SR/CCD/OID/steady/experiment and cross-chain/estimand cautions pass.
Two-section cadence and second audit
- Coordinator presents two detailed packets together.
- Author responds to both; coordinator records accepted, provisional and open feedback.
- Coordinator launches two tightly scoped continuation agents in parallel.
- Coordinator re-reads both outputs and controlling authorities, checks interfaces/duplication/claims/displays/choices, and records a second audit.
- Only then may R4 become
frozenor R5 prose become drafting-ready.
Statuses
researching: a named controlling read is incomplete.discuss: a bounded author choice is decision-ready.revise: targeted argument/design/interface correction is needed.frozen: coordinator second audit locked the R4 text contract.blocked: required authority, material, role, comparator, decision or conflict resolution is absent.author-interface: substantive content is explicitly reserved for author supply and provenance binding; it is neither frozen nor an agent-filled gap.
An integration correction pass returns recommendations only; it does not perform the coordinator second audit or set a new freeze.
Final Round-4 audit checks the paired sections in the whole-manuscript order, ownership, bridges, claim ladder, display/equation inventory, accepted author decisions and Round-5 handoff. Optional omitted panels do not block text when a safe fallback preserves the argument.