refactor(workflow): update JFM research workflow and remove obsolete figures

Revise the JFM research workflow documentation to clarify project structure, decision-making processes, and tool routing. Remove outdated figures and images that are no longer relevant to the current manuscript. Ensure that the workflow aligns with the latest research objectives and safety protocols.
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---
description: Operational JFM Round-5 paragraph and TeX drafting protocol
globs: "{docs/JFM_WYQ/ROUND5_BOTTOM_UP/**/*.tex,docs/JFM_WYQ/ROUND5_BOTTOM_UP/**/*.md,docs/JFM_WYQ/MANUSCRIPT/**/*.tex,docs/JFM_WYQ/MANUSCRIPT/**/*.md}"
alwaysApply: false
---
# JFM Round-5 Paragraph Drafting Protocol
## Authority and paragraph contract
- Draft from the owning current R4 section packet and paragraph evidence card. Obey jobs, ownership, imports/exports, claim ceiling, terminology, display/equation plan, author slots, gates, and fallbacks; current authorities control scientific facts.
- Literature supports external propositions and rhetorical diagnosis only; it never verifies a DynamisLab result, number, artifact, priority, or readiness. Retain source state and do not use mapped/snippet evidence for detailed wording or structural claims.
- Order paragraphs as `claim/question → comparator/definition → evidence → bounded interpretation → local caveat → consequence/bridge`. Put the dangerous limitation beside its claim and keep distinct configurations, acquisitions, estimands, masks, windows, and evidence chains separate.
- Use green wording directly, amber only with the named test/object and adjacent qualifier, and delete red wording unless a dedicated authority licenses it. Avoid causal, mechanism, necessary, sufficient, stable, optimal, robust, general, transferable, validating, or independently confirming claims unless explicitly earned.
## Displays, equations, and TeX
- Keep prose-ready and artifact-ready separate. Use only licensed displays and captions; otherwise use the recorded textual fallback or clearly marked placeholder. Never imply a planned artifact exists or is approved.
- Display equations only when owned, source-bound, licensed, and used immediately or repeatedly. Define symbols, normalization, units, sign, and domain at first use; import owner notation rather than re-deriving or duplicating it.
- Clearly mark every placeholder and name the author-supplied field needed. Do not fabricate `\ref`, `\label`, `\cite`, or bibliography keys; labels, citations, and equations must be owned and source-bound.
- Produce section TeX only. Do not perform final-master formatting, template integration, submission metadata, or global preamble work.
## Style and self-audit
- Use concrete physical subjects and verbs. Remove throat-clearing, generic AI promotion, package chronology, inventories, panel narration, repeated templates, decorative lists, unsupported intensifiers, method catalogues, roadmap endings, and heading-repeating conclusions.
- Keep a number only when it changes the inference. Let captions decode conditions and metadata while body prose carries comparison, inference, limitation, and consequence. Define an acronym once and do not rename fixed terms for variety.
- Before acceptance verify one paragraph job; authorized claim and exact evidence; comparator before inference; local caveat; valid citation source state; display/equation ownership; no chain pooling or duplication; intended bridge; and no filled author-only slot, invented key, or promoted artifact.