docs(jfm): establish traceable manuscript planning baseline

Track the research dossiers, section freezes, supporting manuscript materials, and round-aware agent controls so future drafting decisions can be reviewed across both repository mirrors. Co-authored-by: Cursor <cursoragent@cursor.com>
2026-08-10 18:51:53 +08:00
parent 140eea4d25
commit 0ade812864
143 changed files with 37165 additions and 1 deletions
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+%% ----------------------------------------------------------------
+%% Thesis.tex -- MAIN FILE 
+%% Use the "Thesis" style, based on the ECS Thesis style by Steve Gunn
+%% Revised by Qiang Yang
+%% ---------------------------------------------------------------- 
+
+% Set up the document
+\documentclass[a4paper, 11pt, twoside]{Thesis} 
+
+
+%----------packages----------------
+\usepackage{amsmath,amssymb,amsfonts}
+\usepackage{mathptmx}
+\usepackage[T1]{fontenc}
+\usepackage[ruled,linesnumbered]{algorithm2e}
+\usepackage{multirow}
+\usepackage{wrapfig}
+\graphicspath{{Figures/}} % Location of the graphics files (set up for graphics to be in PDF format)
+\usepackage{subfig}
+\captionsetup{labelfont=rm,figurename=Figure} %FIGURE->Figure
+\captionsetup[subfloat]{labelfont=rm,labelformat=simple} % (A)->(a)
+\renewcommand{\thesubfigure}{(\alph{subfigure})} % Fig. 3.3a -> Fig.3.3(a)
+\usepackage{gensymb} % \degree
+\usepackage{graphbox}
+\usepackage{libertine}
+\usepackage[square, numbers, comma, sort&compress]{natbib}  % Use the "Natbib" style for the references in the Bibliography
+\usepackage{verbatim}  % Needed for the "comment" environment to make LaTeX comments
+\usepackage{float} % To keep figures in place
+\hypersetup{urlcolor=black, % url
+citecolor=violet, % citation
+linkcolor=violet, % table of contents, inner color
+colorlinks=true,  
+pdfborder = {0 0 0}}  % Colours hyperlinks in blue
+% Define enumerated description lists
+\usepackage{enumitem}
+\usepackage{kantlipsum}
+%------------------------------------
+
+%----------new commands--------------
+\renewcommand{\bibname}{Reference}
+\newcommand{\todo}[1]{\textcolor{red}{TODO: #1}\PackageWarning{TODO:}{#1!}}
+\newcommand{\update}[1]{\textcolor{blue}{#1}}
+\newcommand{\rev}[1]{\textcolor{red}{#1}} 
+\newcommand{\etal}{\textit{et al}.}
+\newcommand{\ie}{\textit{i}.\textit{e}.}
+\newcommand{\eg}{\textit{e}.\textit{g}.}
+\newcommand{\etc}{\textit{etc}.}
+\newcommand{\bits}[1]{\texttt{#1}}
+\newcommand{\cmd}[1]{\texttt{#1}}
+\newcommand{\code}[1]{\texttt{#1}}
+\renewcommand\chaptermark[1]{\markboth{\chaptername\ \thechapter. #1}{}}
+\renewcommand\sectionmark[1]{\markright{\thesection. #1}}
+%--------------------------------------
+
+%-------------control-------------------
+\addtolength{\oddsidemargin}{-18pt} % left margin of odd
+\addtolength{\evensidemargin}{18pt} % left margin of even
+\newcounter{descriptcount}
+\newcounter{descriptcount2}
+\newlist{enumdescript}{description}{2}
+\setlist[enumdescript,1]{%
+  before={\setcounter{descriptcount}{0}%
+          \renewcommand*\thedescriptcount{\arabic{descriptcount}.}}
+  ,font=\bfseries\stepcounter{descriptcount}\thedescriptcount~
+}
+\setlist[enumdescript,2]{%
+  before={\setcounter{descriptcount2}{0}%
+          \renewcommand*\thedescriptcount{\roman{descriptcount2}.}}
+  ,font=\bfseries\stepcounter{descriptcount2}\thedescriptcount~
+}
+% reduce the word break between lines
+% \tolerance=1
+% \emergencystretch=\maxdimen
+% \hyphenpenalty=10000
+% \hbadness=10000
+%---------------------------------------
+
+
+\makeatother
+
+
+%% ------------Document begins---------------------------
+\begin{document}
+
+%% ---Cover page---------------
+% \input{Format/Coverpage}
+
+%%-------title page------------
+% For changes in supervisor, degree type, research group, etc. please change the Thesis.cls file
+
+\frontmatter      % Begin the book's numbering; frontpage
+%\pagenumbering{arabic}
+
+% Set up the Title Page
+\title{Hydrodynamic Cloaking and Illusion Using Active Flow Control}
+
+\authors  {\texorpdfstring
+            {\href{mailto:yan-qi.wang@connect.polyu.hk}{WANG YANQI}}
+            {Author's Name}
+            }
+\addresses  {\groupname\\\deptname\\\univname}  % Do not change this here, instead these must be set in the "Thesis.cls" file, please look through it instead
+\date       {August 2025}
+\subject    {}
+\keywords   {}
+
+\maketitle
+
+%% ------------format settings ---------
+
+\setstretch{1.5}  % It is better to have smaller font and larger line spacing than the other way round
+
+% Define the page headers using the FancyHdr package and set up for one-sided printing
+\fancyhead{}  % Clears all page headers and footers
+\rhead{\thepage}  % Sets the right side header to show the page number
+\lhead{}  % Clears the left side page header
+\pagestyle{fancy}  % Finally, use the "fancy" page style to implement the FancyHdr headers
+
+%% ------------Declaration Page----------
+% Declaration Page required for the Thesis, your institution may give you a different text to place here
+% \input{Format/Declaration}
+
+
+%% -------------
+% add a empty page
+% \pagestyle{empty}
+% \vfill\vfill\vfill\vfill\vfill\vfill\null
+
+% \clearpage
+%% --------------
+
+
+%%--------- The Abstract Page---------------------
+\addtotoc{Abstract}  % Add the "Abstract" page entry to the Contents
+\input{Format/Abstract}
+% \clearpage  % Abstract ended, start a new page
+
+%%----------Publication Page----------------------
+% \input{Format/Publication}
+
+
+%-----------The Acknowledgements page-------------
+% \input{Format/ACK}
+% \clearpage  % End of the Acknowledgements
+
+
+%% ---------Add Table of Content-------------------
+
+\pagestyle{fancy}  %The page style headers have been "empty" all this time, now use the "fancy" headers as defined before to bring them back
+
+\lhead{\emph{Contents}}  % Set the left side page header to "Contents"
+\tableofcontents  % Write out the Table of Contents
+
+%% ---------List of Figures and Tables-------------
+\lhead{\emph{List of Figures}}  % Set the left side page header to "List if Figures"
+\listoffigures  % Write out the List of Figures
+\let\cleardoublepage\clearpage % clear the blank page
+
+\lhead{\emph{List of Tables}}  % Set the left side page header to "List of Tables"
+\listoftables  % Write out the List of Tables
+
+%% ---------Abbreviations-----------------------------
+\setstretch{1.5}  % Set the line spacing to 1.5, this makes the following tables easier to read
+% \clearpage  % Start a new page
+% \lhead{\emph{Abbreviations}}  % Set the left side page header to "Abbreviations"
+% \listofsymbols{ll}  % Include a list of Abbreviations (a table of two columns)
+% {
+% \textbf{Acronym} & \textbf{W}hat (it) \textbf{S}tands \textbf{F}or \\
+% % Abbreviations go here
+% }
+
+
+
+%% ---------Text format--------------------------------
+\mainmatter	  % Begin normal, numeric (1,2,3...) page numbering
+\pagestyle{fancy}  % Return the page headers back to the "fancy" style
+\fancyhf{}
+\fancyhead[OL]{\rightmark}
+\fancyhead[OR]{\thepage}
+\fancyhead[EL]{\thepage}
+\fancyhead[ER]{\leftmark}
+
+
+%%---------Thesis text----------------------------------
+
+\input{Chapters/1.Introduction} 
+\input{Chapters/2.ProblemDescription}
+\input{Chapters/3.Methodology}
+\input{Chapters/4.Result}
+\input{Chapters/5.Conclusion&FutureWork}
+
+\addtocontents{toc}{\vspace{2em}}  % Add a gap in the Contents, for aesthetics
+\backmatter % End the book's numbering; backpage
+
+%% --------Reference-------------------------------------
+\label{Bibliography}
+\fancyhf{}
+\fancyhead[OL]{\emph{References}}
+\fancyhead[OR]{\thepage}
+\fancyhead[EL]{\thepage}
+\fancyhead[ER]{\emph{References}}
+
+% Reference style
+% \bibliographystyle{ACM-Reference-Format}
+\bibliographystyle{acm}
+\bibliography{mybibfile}  
+
+\end{document}  % The End
+%% ----------------------------------------------------------------