docs(jfm): establish traceable manuscript planning baseline

Track the research dossiers, section freezes, supporting manuscript materials, and round-aware agent controls so future drafting decisions can be reviewed across both repository mirrors.

Co-authored-by: Cursor <cursoragent@cursor.com>
This commit is contained in:
Frank14f
2026-08-10 18:51:53 +08:00
co-authored by Cursor
parent 140eea4d25
commit 0ade812864
143 changed files with 37165 additions and 1 deletions
+468
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%%
%% This is file `Thesis.cls', based on 'ECSthesis.cls', by Steve R. Gunn
%% generated with the docstrip utility.
%%
%% Created by Steve R. Gunn, modified by Sunil Patel: www.sunilpatel.co.uk
\NeedsTeXFormat{LaTeX2e}[1996/12/01]
\ProvidesClass{Thesis}
[2007/22/02 v1.0
LaTeX document class]
\def\baseclass{book}
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{\baseclass}}
\def\@checkoptions#1#2{
\edef\@curroptions{\@ptionlist{\@currname.\@currext}}
\@tempswafalse
\@tfor\@this:=#2\do{
\@expandtwoargs\in@{,\@this,}{,\@curroptions,}
\ifin@ \@tempswatrue \@break@tfor \fi}
\let\@this\@empty
\if@tempswa \else \PassOptionsToClass{#1}{\baseclass}\fi
}
\@checkoptions{11pt}{{10pt}{11pt}{12pt}}
\PassOptionsToClass{a4paper}{\baseclass}
\ProcessOptions\relax
\LoadClass{\baseclass}
\newcommand\bhrule{\typeout{------------------------------------------------------------------------------}}
\newcommand\Declaration[1]{
\btypeout{Certificate of Originality}
\addtotoc{Certificate of Originality}
\thispagestyle{plain}
\null\vfil
%\vskip 60\p@
\begin{center}{\huge\bf CERTIFICATE OF ORIGINALITY\par}\end{center}
%\vskip 60\p@
{\normalsize #1}
\vfil\vfil\null
%\cleardoublepage
}
\newcommand\btypeout[1]{\bhrule\typeout{\space #1}\bhrule}
\def\today{\ifcase\month\or
January\or February\or March\or April\or May\or June\or
July\or August\or September\or October\or November\or December\fi
\space \number\year}
\usepackage{setspace}
\onehalfspacing
\setlength{\parindent}{0pt}
\setlength{\parskip}{2.0ex plus0.5ex minus0.2ex}
\usepackage{vmargin}
\setmarginsrb { 1.5in} % left margin
{ 0.6in} % top margin
{ 1.0in} % right margin
{ 0.8in} % bottom margin
{ 20pt} % head height
{0.25in} % head sep
{ 9pt} % foot height
{ 0.3in} % foot sep
\raggedbottom
\setlength{\topskip}{1\topskip \@plus 5\p@}
\doublehyphendemerits=10000 % No consecutive line hyphens.
\brokenpenalty=10000 % No broken words across columns/pages.
\widowpenalty=9999 % Almost no widows at bottom of page.
\clubpenalty=9999 % Almost no orphans at top of page.
\interfootnotelinepenalty=9999 % Almost never break footnotes.
\usepackage{fancyhdr}
\lhead[\rm\thepage]{\fancyplain{}{\sl{\rightmark}}}
\rhead[\fancyplain{}{\sl{\leftmark}}]{\rm\thepage}
\chead{}\lfoot{}\rfoot{}\cfoot{}
\pagestyle{fancy}
\renewcommand{\chaptermark}[1]{\btypeout{\thechapter\space #1}\markboth{\@chapapp\ \thechapter\ #1}{\@chapapp\ \thechapter\ #1}}
\renewcommand{\sectionmark}[1]{}
\renewcommand{\subsectionmark}[1]{}
\def\cleardoublepage{\clearpage\if@twoside \ifodd\c@page\else
\hbox{}
\thispagestyle{empty}
% \newpage
\if@twocolumn\hbox{}\newpage\fi\fi\fi}
% packages----------------------------------------------------
% Table configuration packages
\usepackage{array,graphicx}
\usepackage{booktabs}
\usepackage{pifont}
\usepackage{tabu}
\usepackage{longtable}
\usepackage{xcolor}
\usepackage{tcolorbox}
\usepackage{textcomp}
\usepackage{multicol}
\usepackage{url}
\def\UrlBreaks{\do\A\do\B\do\C\do\D\do\E\do\F\do\G\do\H\do\I\do\J
\do\K\do\L\do\M\do\N\do\O\do\P\do\Q\do\R\do\S\do\T\do\U\do\V
\do\W\do\X\do\Y\do\Z\do\[\do\\\do\]\do\^\do\_\do\`\do\a\do\b
\do\c\do\d\do\e\do\f\do\g\do\h\do\i\do\j\do\k\do\l\do\m\do\n
\do\o\do\p\do\q\do\r\do\s\do\t\do\u\do\v\do\w\do\x\do\y\do\z
\do\.\do\@\do\\\do\/\do\!\do\_\do\|\do\;\do\>\do\]\do\)\do\,
\do\?\do\'\do+\do\=\do\#}
%----------------------------
\usepackage{amsmath,amsfonts,amssymb,amscd,amsthm,xspace}
\theoremstyle{plain}
\newtheorem{example}{Example}[chapter]
\newtheorem{theorem}{Theorem}[chapter]
\newtheorem{corollary}[theorem]{Corollary}
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{proposition}[theorem]{Proposition}
\newtheorem{axiom}[theorem]{Axiom}
\theoremstyle{definition}
\newtheorem{definition}[theorem]{Definition}
\theoremstyle{remark}
\newtheorem{remark}[theorem]{Remark}
\usepackage[centerlast,small,sc]{caption}
\setlength{\captionmargin}{20pt}
\newcommand{\fref}[1]{Fig.~\ref{#1}}
\newcommand{\tref}[1]{Table~\ref{#1}}
\newcommand{\eref}[1]{Equation~\ref{#1}}
\newcommand{\cref}[1]{Chapter~\ref{#1}}
\newcommand{\sref}[1]{Section~\ref{#1}}
\newcommand{\aref}[1]{Appendix~\ref{#1}}
\renewcommand{\topfraction}{0.85}
\renewcommand{\bottomfraction}{.85}
\renewcommand{\textfraction}{0.1}
\renewcommand{\dbltopfraction}{.85}
\renewcommand{\floatpagefraction}{0.75}
\renewcommand{\dblfloatpagefraction}{.75}
\setcounter{topnumber}{9}
\setcounter{bottomnumber}{9}
\setcounter{totalnumber}{20}
\setcounter{dbltopnumber}{9}
\usepackage{graphicx}
\usepackage{epstopdf}
%\usepackage[scriptsize]{subfigure}
\usepackage{booktabs}
\usepackage{rotating}
\usepackage{listings}
\usepackage{Format/lstpatch}
\lstset{captionpos=b,
frame=tb,
basicstyle=\scriptsize\ttfamily,
showstringspaces=false,
keepspaces=true}
\lstdefinestyle{matlab} {
language=Matlab,
keywordstyle=\color{blue},
commentstyle=\color[rgb]{0.13,0.55,0.13}\em,
stringstyle=\color[rgb]{0.7,0,0} }
\usepackage[pdfpagemode={UseOutlines},bookmarks=true,bookmarksopen=true,
bookmarksopenlevel=0,bookmarksnumbered=true,hypertexnames=false,
colorlinks,linkcolor={blue},citecolor={blue},urlcolor={red},
pdfstartview={FitV},unicode,breaklinks=true]{hyperref}
\pdfstringdefDisableCommands{
\let\\\space
}
\newcommand*{\examiner}[1]{\def\examname{#1}}
%\newcommand*{\degree}[1]{\def\degreename{#1}}
\newcommand*{\authors}[1]{\def\authornames{#1}}
\newcommand*{\addresses}[1]{\def\addressnames{#1}}
\newcommand*{\university}[1]{\def\univname{#1}}
\newcommand*{\UNIVERSITY}[1]{\def\UNIVNAME{#1}}
\newcommand*{\department}[1]{\def\deptname{#1}}
\newcommand*{\DEPARTMENT}[1]{\def\DEPTNAME{#1}}
\newcommand*{\group}[1]{\def\groupname{#1}}
\newcommand*{\GROUP}[1]{\def\GROUPNAME{#1}}
\newcommand*{\faculty}[1]{\def\facname{#1}}
\newcommand*{\FACULTY}[1]{\def\FACNAME{#1}}
\newcommand*{\subject}[1]{\def\subjectname{#1}}
\newcommand*{\keywords}[1]{\def\keywordnames{#1}}
\newcommand*{\supervisor}[1]{\def\supname{#1}}
\examiner {}
%\degree {}
\authors {}
\university {\texorpdfstring{\href{https://www.auth.gr}
{The Hong Kong Polytechnic University}}
{University name}}
\UNIVERSITY {\texorpdfstring{
{\Large The Hong Kong Polytechnic University}}
{UNIVERSITY NAME (IN BLOCK CAPITALS)}}
\department {\texorpdfstring{
{Department of Mechanical Engineering}}
{Department or School Name}}
\DEPARTMENT {\texorpdfstring{
{Department of Mechanical Engineering}}
{DEPARTMENT OR SCHOOL NAME (IN BLOCK CAPITALS)}}
\group {\texorpdfstring{\href{https://datalab.csd.auth.gr/}
{Datalab: Tang Group}}
{Research Group Name}}
\GROUP {\texorpdfstring{\href{https://datalab.csd.auth.gr/}
{DATALAB: Tang Group}}
{RESEARCH GROUP NAME (IN BLOCK CAPITALS)}}
\faculty {\texorpdfstring{
{Faculty of Engineering}}
{Faculty Name}}
\FACULTY {\texorpdfstring{\href{http://www.sci.auth.gr/}
{FACULTY OF Engineering}}
{FACULTY NAME (IN BLOCK CAPITALS)}}
\supervisor {\texorpdfstring{
{Supervising Professor: Tang Hui, Chen Shiyi}}
{Supervising Professor's name}}
\addresses {}
\subject {}
\keywords {}
\renewcommand\maketitle{
\btypeout{Title Page}
\hypersetup{pdftitle={\@title}}
\hypersetup{pdfsubject=\subjectname}
\hypersetup{pdfauthor=\authornames}
\hypersetup{pdfkeywords=\keywordnames}
\thispagestyle{empty}
\begin{titlepage}
\let\footnotesize\small
\let\footnoterule\relax
\let \footnote \thanks
\setcounter{footnote}{0}
\null\vfil
\vskip 60\p@
\begin{center}
% \begin{figure}
% \centering
% \includegraphics[scale=0.45]{Figures/Logo_polyu}
% \end{figure}
\setlength{\parskip}{0pt}
{\Huge \UNIVNAME \par}
\par
{\large \deptname \par}
\vfill
{\huge \bf \@title \par}
\vfill
%{\large by \par}
% \bigskip
% \bigskip
{\LARGE \authornames \par}
\vfill
{\large \textit{A report submitted in partial fulfilment of the requirements} \par}
{\large \textit{for the confirmation of} \par}
{\large \textit{\textbf{Doctor of Philosophy}} \par}
\bigskip
\bigskip
%{\large \textit{in the} \par}
%{\large \deptname \par}
%{\large \facname \par}
\bigskip
\bigskip
% {\large \supname \par}
\bigskip
\bigskip
\bigskip
\bigskip
{\Large \@date \par}
\end{center}
\par
\@thanks
\vfil\null
\end{titlepage}
\setcounter{footnote}{0}%
\global\let\thanks\relax
\global\let\maketitle\relax
\global\let\@thanks\@empty
\global\let\@author\@empty
\global\let\@date\@empty
\global\let\@title\@empty
\global\let\title\relax
\global\let\author\relax
\global\let\date\relax
\global\let\and\relax
\clearpage
}
% \newenvironment{abstract}
% {
% \btypeout{Abstract Page}
% \thispagestyle{empty}
% \null\vfil
% \begin{center}
% \setlength{\parskip}{0pt}
% {\normalsize \UNIVNAME \par}
% \bigskip
% {\huge{\textit{Abstract}} \par}
% \bigskip
% {\normalsize \facname \par}
% {\normalsize \deptname \par}
% \bigskip
% {\normalsize Undergraduate Degree\par}
% \bigskip
% {\normalsize\bf \@title \par}
% \medskip
% {\normalsize by \authornames \par}
% \bigskip
% \end{center}
% }
\newenvironment{abstract}
{
\btypeout{Abstract Page}
\thispagestyle{plain}
%\null\vfil
\begin{center}
{\huge{\textit{Abstract}} \par}
\end{center}
}
{
\vfil\vfil\vfil\null
\clearpage
}
\addtocounter{secnumdepth}{1}
\setcounter{tocdepth}{6}
\newcounter{dummy}
\newcommand\addtotoc[1]{
\refstepcounter{dummy}
\addcontentsline{toc}{chapter}{#1}}
\renewcommand\tableofcontents{
\btypeout{Table of Contents}
\begin{spacing}{1}{
\setlength{\parskip}{1pt}
\if@twocolumn
\@restonecoltrue\onecolumn
\else
\@restonecolfalse
\fi
\chapter*{\contentsname
\@mkboth{
\MakeUppercase\contentsname}{\MakeUppercase\contentsname}}
\@starttoc{toc}
\if@restonecol\twocolumn\fi
\clearpage
}\end{spacing}
}
\renewcommand\listoffigures{
\btypeout{List of Figures}
\addtotoc{List of Figures}
\begin{spacing}{1}{
\setlength{\parskip}{1pt}
\if@twocolumn
\@restonecoltrue\onecolumn
\else
\@restonecolfalse
\fi
\chapter*{\listfigurename
\@mkboth{\MakeUppercase\listfigurename}
{\MakeUppercase\listfigurename}}
\@starttoc{lof}
\if@restonecol\twocolumn\fi
\clearpage
}\end{spacing}
}
\renewcommand\listoftables{
\btypeout{List of Tables}
\addtotoc{List of Tables}
\begin{spacing}{1}{
\setlength{\parskip}{1pt}
\if@twocolumn
\@restonecoltrue\onecolumn
\else
\@restonecolfalse
\fi
\chapter*{\listtablename
\@mkboth{
\MakeUppercase\listtablename}{\MakeUppercase\listtablename}}
\@starttoc{lot}
\if@restonecol\twocolumn\fi
\clearpage
}\end{spacing}
}
\newcommand\listsymbolname{Abbreviations}
\usepackage{longtable}
\newcommand\listofsymbols[2]{
\btypeout{\listsymbolname}
\addtotoc{\listsymbolname}
\chapter*{\listsymbolname
\@mkboth{
\MakeUppercase\listsymbolname}{\MakeUppercase\listsymbolname}}
\begin{longtable}[c]{#1}#2\end{longtable}\par
\cleardoublepage
}
\newcommand\listconstants{Physical Constants}
\usepackage{longtable}
\newcommand\listofconstants[2]{
\btypeout{\listconstants}
\addtotoc{\listconstants}
\chapter*{\listconstants
\@mkboth{
\MakeUppercase\listconstants}{\MakeUppercase\listconstants}}
\begin{longtable}[c]{#1}#2\end{longtable}\par
\cleardoublepage
}
\newcommand\listnomenclature{Symbols}
\usepackage{longtable}
\newcommand\listofnomenclature[2]{
\btypeout{\listnomenclature}
\addtotoc{\listnomenclature}
\chapter*{\listnomenclature
\@mkboth{
\MakeUppercase\listnomenclature}{\MakeUppercase\listnomenclature}}
\begin{longtable}[c]{#1}#2\end{longtable}\par
\cleardoublepage
}
\newcommand\acknowledgements[1]{
\btypeout{Acknowledgements}
\addtotoc{Acknowledgements}
\thispagestyle{plain}
\begin{center}{\huge{\textit{Acknowledgements}} \par}\end{center}
{\normalsize #1}
\vfil\vfil\null
}
\newcommand\publications[1]{
\btypeout{Publications}
\addtotoc{Publications Arising from the Thesis}
\thispagestyle{plain}
\begin{center}{\huge{\textit{Publications Arising from the Thesis}} \par}\end{center}
{\normalsize #1}
\vfil\vfil\null
}
\newcommand\dedicatory[1]{
\btypeout{Dedicatory}
\thispagestyle{plain}
\null\vfil
\vskip 60\p@
\begin{center}{\Large \sl #1}\end{center}
\vfil\null
% \cleardoublepage
\clearpage
}
\renewcommand\backmatter{
\if@openright
% \cleardoublepage
\clearpage
\else
\clearpage
\fi
\addtotoc{\bibname}
\btypeout{\bibname}
\@mainmatterfalse}
\endinput
%%
%% End of file `Thesis.cls'.