docs(jfm): establish traceable manuscript planning baseline
Track the research dossiers, section freezes, supporting manuscript materials, and round-aware agent controls so future drafting decisions can be reviewed across both repository mirrors. Co-authored-by: Cursor <cursoragent@cursor.com>
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%\usepackage[switch]{lineno}
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%\newcounter{lasttextlineno}
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\usepackage[pagewise,mathlines]{lineno}
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\runninglinenumbers %% for continous line numbering regardless of box and minipage but only on left side in single/double column
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%\linenumbers %% properly in single/double column but boxes and minipage linenos not getting continuous
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%\pagewiselinenumbers%%
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\newif \ifLineNumbers%
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\linenumberdisplaymath
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\def\linenumberfont{\normalfont\fontsize{8}{10}\selectfont}
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\if@twocolumn
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\setlength\marginparwidth{.75cm}
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\setlength\marginparsep{19.5\p@}
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\else
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\setlength\marginparwidth{3.0cm}
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\setlength\marginparsep{24\p@}
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\fi
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\newcommand\linenomathWithnumbersforams{%
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\ifLineNumbers
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%\ifx\@@par\@@@par\else
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\ifnum\interlinepenalty>-\linenopenaltypar
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\global\holdinginserts\thr@@
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\advance\interlinepenalty \linenopenalty
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\ifhmode % v4.3
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\advance\predisplaypenalty \linenopenalty
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\fi
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%\advance\postdisplaypenalty \linenopenalty
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\advance\interdisplaylinepenalty \linenopenalty
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\fi
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\fi
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\ignorespaces
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}
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\newcommand\linenomathWithnumbersformultline{%
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\ifLineNumbers
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%\ifx\@@par\@@@par\else
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\ifnum\interlinepenalty>-\linenopenaltypar
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\global\holdinginserts\thr@@
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\advance\interlinepenalty \linenopenalty
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\ifhmode % v4.3
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%\advance\predisplaypenalty \linenopenalty
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\fi
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%\advance\postdisplaypenalty \linenopenalty
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\advance\interdisplaylinepenalty \linenopenalty
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\fi
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\fi
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\ignorespaces
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}
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\newcommand*\patchAmsMathEnvironmentForLineno[1]{%
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\expandafter\let\csname old#1\expandafter\endcsname\csname #1\endcsname
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\expandafter\let\csname oldend#1\expandafter\endcsname\csname end#1\endcsname
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\renewenvironment{#1}%
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{\def\linenomath{\linenomathWithnumbersforams}%added
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\@namedef{linenomath*}{\linenomathNonumbers}%added
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\linenomath\csname old#1\endcsname}%
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{\csname oldend#1\endcsname\endlinenomath}}%
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\newcommand*\patchBothAmsMathEnvironmentsForLineno[1]{%
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\patchAmsMathEnvironmentForLineno{#1}%
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\patchAmsMathEnvironmentForLineno{#1*}%
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}%
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\AtBeginDocument{%
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%\patchBothAmsMathEnvironmentsForLineno{equation}% deleted
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%\patchBothAmsMathEnvironmentsForLineno{align}%
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\patchBothAmsMathEnvironmentsForLineno{flalign}%
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\patchBothAmsMathEnvironmentsForLineno{alignat}%
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\patchBothAmsMathEnvironmentsForLineno{gather}%
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%\patchBothAmsMathEnvironmentsForLineno{multline}%
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%\patchBothAmsMathEnvironmentsForLineno{split}%
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\patchAmsMathEnvironmentForLineno{array}%
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%\patchAmsMathEnvironmentForLineno{split}%
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}
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%%\AtBeginDocument{%
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\let\LN@align\align
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\let\LN@endalign\endalign
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\renewenvironment{align}%
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{\linenomath\LN@align}%
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{\LN@endalign\endlinenomath}%
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%%}
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\renewenvironment{multline}{\linenomathWithnumbersformultline%
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\start@multline\st@rredfalse
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}{%
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\iftagsleft@ \@xp\lendmultline@ \else \@xp\rendmultline@ \fi
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\ignorespacesafterend
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\endlinenomath}
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\renewenvironment{multline*}{\linenomathWithnumbersformultline\start@multline\st@rredtrue}{\endmultline\endlinenomath}
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\def\insplit@{%
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\global\setbox\z@\vbox\bgroup
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\Let@ \chardef\dspbrk@context\@ne \restore@math@cr
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\default@tag % disallow use of \tag here
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\ialign\bgroup
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\hfil%
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\strut@
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$\m@th\displaystyle{##}$%
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&$\m@th\displaystyle{{}##}$%
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\hfill % Why not \hfil?---dmj, 1994/12/28
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\crcr\noalign{\global\advance\c@linenumber\@ne}%
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}
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\makeatletter
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\setlength\marginparsep{12\p@}
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\setlength\marginparpush{0\p@}
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\setlength\marginparwidth{2.6pc}
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\makeatother
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\endinput
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