docs(jfm): establish traceable manuscript planning baseline

Track the research dossiers, section freezes, supporting manuscript materials, and round-aware agent controls so future drafting decisions can be reviewed across both repository mirrors.

Co-authored-by: Cursor <cursoragent@cursor.com>

docs/JFM_WYQ/My_JFM/jfm.bib

@@ -0,0 +1,210 @@
+@article{Urzhumov2012,
+  author = {Urzhumov, Y. A. and Smith, D. R.},
+  title = {Fluid flow control with transformation media},
+  journal = {Phys. Rev. Lett.},
+  volume = {107},
+  pages = {074501},
+  year = {2011}
+}
+
+@article{Rabault2019,
+  author = {Rabault, J. and Kuchta, M. and Jensen, A. and R{\'e}glade, U. and Cerardi, N.},
+  title = {Artificial neural networks trained through deep reinforcement learning discover control strategies for active flow control},
+  journal = {J. Fluid Mech.},
+  volume = {865},
+  pages = {281--302},
+  year = {2019},
+  doi = {10.1017/jfm.2019.62}
+}
+
+@article{Paris2021,
+  author = {Paris, R. and Beneddine, S. and Dandois, J.},
+  title = {Robust flow control and optimal sensor placement using deep reinforcement learning},
+  journal = {J. Fluid Mech.},
+  volume = {913},
+  pages = {A25},
+  year = {2021},
+  doi = {10.1017/jfm.2020.1170}
+}
+
+@article{Tang2020,
+  author = {Tang, H. and Rabault, J. and Kuhnle, A. and Wang, Y. and Wang, T.},
+  title = {Robust active flow control over a range of {R}eynolds numbers using an artificial neural network trained through deep reinforcement learning},
+  journal = {Phys. Fluids},
+  volume = {32},
+  pages = {053605},
+  year = {2020},
+  doi = {10.1063/5.0006492}
+}
+
+@article{CornejoMaceda2021,
+  author = {Cornejo Maceda, G. Y. and Li, Y. and Lusseyran, F. and Morzy{\'n}ski, M. and Noack, B. R.},
+  title = {Stabilization of the fluidic pinball with gradient-enriched machine learning control},
+  journal = {J. Fluid Mech.},
+  volume = {917},
+  pages = {A42},
+  year = {2021},
+  doi = {10.1017/jfm.2021.301}
+}
+
+@article{Deng2020,
+  author = {Deng, N. and Noack, B. R. and Morzy{\'n}ski, M. and Pastur, L. R.},
+  title = {Low-order model for successive bifurcations of the fluidic pinball},
+  journal = {J. Fluid Mech.},
+  volume = {884},
+  pages = {A37},
+  year = {2020},
+  doi = {10.1017/jfm.2019.959}
+}
+
+@article{Loiseau2018Galerkin,
+  author = {Loiseau, J.-C. and Brunton, S. L.},
+  title = {Constrained sparse {G}alerkin regression},
+  journal = {J. Fluid Mech.},
+  volume = {838},
+  pages = {42--67},
+  year = {2018},
+  doi = {10.1017/jfm.2017.823}
+}
+
+@article{Loiseau2018,
+  author = {Loiseau, J.-C. and Noack, B. R. and Brunton, S. L.},
+  title = {Sparse reduced-order modelling: sensor-based dynamics to full-state estimation},
+  journal = {J. Fluid Mech.},
+  volume = {844},
+  pages = {459--490},
+  year = {2018},
+  doi = {10.1017/jfm.2018.147}
+}
+
+@article{Brunton2016,
+  author = {Brunton, S. L. and Proctor, J. L. and Kutz, J. N.},
+  title = {Discovering governing equations from data by sparse identification of nonlinear dynamical systems},
+  journal = {Proc. Natl Acad. Sci. USA},
+  volume = {113},
+  pages = {3932--3937},
+  year = {2016},
+  doi = {10.1073/pnas.1517384113}
+}
+
+@article{Gautier2015,
+  author = {Gautier, N. and Aider, J.-L. and Duriez, T. and Noack, B. R. and Segond, M. and Abel, M. W.},
+  title = {Closed-loop separation control using machine learning},
+  journal = {J. Fluid Mech.},
+  volume = {770},
+  pages = {442--457},
+  year = {2015}
+}
+
+@article{Li2017,
+  author = {Li, R. and Noack, B. R. and Cordier, L. and Bor{\'e}e, J. and Harambat, F.},
+  title = {Drag reduction of a car model by linear genetic programming control},
+  journal = {Exp. Fluids},
+  volume = {58},
+  pages = {103},
+  year = {2017}
+}
+
+@article{Schulman2017,
+  author = {Schulman, J. and Wolski, F. and Dhariwal, P. and Radford, A. and Klimov, O.},
+  title = {Proximal policy optimization algorithms},
+  journal = {arXiv preprint arXiv:1707.06347},
+  year = {2017}
+}
+
+@article{Cranmer2023,
+  author = {Cranmer, M.},
+  title = {Interpretable machine learning for science with {PySR} and {SymbolicRegression.jl}},
+  journal = {arXiv preprint arXiv:2305.01582},
+  year = {2023}
+}
+
+@article{Boree2003,
+  author = {Bor{\'e}e, J.},
+  title = {Extended proper orthogonal decomposition: a tool to analyse correlated events in turbulent flows},
+  journal = {Exp. Fluids},
+  volume = {35},
+  pages = {188--192},
+  year = {2003}
+}
+
+@article{Williamson1996,
+  author = {Williamson, C. H. K.},
+  title = {Vortex dynamics in the cylinder wake},
+  journal = {Annu. Rev. Fluid Mech.},
+  volume = {28},
+  pages = {477--539},
+  year = {1996},
+  doi = {10.1146/annurev.fl.28.010196.002401}
+}
+
+@article{Brunton2020,
+  author = {Brunton, S. L. and Noack, B. R. and Koumoutsakos, P.},
+  title = {Machine learning for fluid mechanics},
+  journal = {Annu. Rev. Fluid Mech.},
+  volume = {52},
+  pages = {477--508},
+  year = {2020},
+  doi = {10.1146/annurev-fluid-010719-060214}
+}
+
+@article{Raibaudo2020,
+  author = {Raibaudo, C. and Zhong, P. and Noack, B. R. and Martinuzzi, R. J.},
+  title = {Machine learning strategies applied to the control of a fluidic pinball},
+  journal = {Phys. Fluids},
+  volume = {32},
+  pages = {015108},
+  year = {2020},
+  doi = {10.1063/1.5127202}
+}
+
+@article{Li2022,
+  author = {Li, S. and Li, W. and Noack, B. R.},
+  title = {Machine-learned control-oriented flow estimation for multi-actuator multi-sensor systems exemplified for the fluidic pinball},
+  journal = {J. Fluid Mech.},
+  year = {2022},
+  doi = {10.1017/jfm.2022.908}
+}
+
+@article{Marra2024,
+  author = {Marra, L. and Cornejo Maceda, G. Y. and Meil{\'a}n-Vila, A. and Guerrero, V. and Rashwan, S. and Noack, B. R. and Discetti, S. and Ianiro, A.},
+  title = {Actuation manifold from snapshot data},
+  journal = {J. Fluid Mech.},
+  year = {2024},
+  doi = {10.1017/jfm.2024.593}
+}
+
+@article{Jin2021,
+  author = {Jin, B. and Illingworth, S. and Sandberg, R.},
+  title = {Optimal sensor and actuator placement for feedback control of vortex shedding},
+  journal = {J. Fluid Mech.},
+  year = {2021},
+  doi = {10.1017/jfm.2021.948}
+}
+
+@article{Gong2020,
+  author = {Gong, J. and Monty, J. and Illingworth, S.},
+  title = {Model-based estimation of vortex shedding in unsteady cylinder wakes},
+  journal = {Phys. Rev. Fluids},
+  volume = {5},
+  pages = {023901},
+  year = {2020},
+  doi = {10.1103/PhysRevFluids.5.023901}
+}
+
+@article{Nair2021,
+  author = {Nair, A. G. and Taira, K. and Brunton, B. W. and Brunton, S. L.},
+  title = {Phase-based control of periodic flows},
+  journal = {J. Fluid Mech.},
+  year = {2021},
+  doi = {10.1017/jfm.2021.735}
+}
+
+@article{Ishar2019,
+  author = {Ishar, R. and Kaiser, E. and Morzy{\'n}ski, M. and Fernex, D. and Semaan, R. and Albers, M. and Meysonnat, P. and Noack, B. R.},
+  title = {Metric for attractor overlap},
+  journal = {J. Fluid Mech.},
+  year = {2019},
+  doi = {10.1017/jfm.2019.447}
+}
+