Build refinement transfers from union and pin physical body support

tests/unit/test_refinement.py

@@ -181,14 +181,14 @@ class FixedPatchSetTests(unittest.TestCase):
             ly, lx = p.fine_shape
             np.testing.assert_array_equal(s.fine_kind[y0:y0 + ly, x0:x0 + lx], p.fine_kind)
             gy, gx = np.divmod(p.ghost_fine.astype(np.int64), lx)
-            np.testing.assert_array_equal(s.ghost_fine[cells:cells + len(gy)],
-                                          (gy + y0) * fx + gx + x0)
-            np.testing.assert_array_equal(s.ghost_coarse[cells:cells + len(gy)], p.ghost_coarse)
+            ghosts = dict(zip(map(int, s.ghost_fine), map(int, s.ghost_coarse)))
+            for f, c in zip((gy + y0) * fx + gx + x0, p.ghost_coarse):
+                self.assertEqual(ghosts[int(f)], int(c))
             q, c = np.divmod(p.coalesce_fine.astype(np.int64), ly * lx)
             cy, cx = np.divmod(c, lx)
-            np.testing.assert_array_equal(s.coalesce_fine[rows:rows + len(q)],
-                                          q * fy * fx + (cy + y0) * fx + cx + x0)
-            np.testing.assert_array_equal(s.coalesce_coarse[rows:rows + len(q)], p.coalesce_coarse)
+            rows_by_target = dict(zip(map(int, s.coalesce_coarse), s.coalesce_fine))
+            for target, children in zip(p.coalesce_coarse, q * fy * fx + (cy + y0) * fx + cx + x0):
+                np.testing.assert_array_equal(rows_by_target[int(target)], children)
             rows, cells = rows + len(q), cells + len(gy)
         self.assertEqual((rows, cells), (len(s.coalesce_coarse), len(s.ghost_fine)))
         self.assertEqual(int((s.fine_kind == ACTIVE).sum()), 4 * int(s.covered.sum()))
@@ -207,10 +207,12 @@ class FixedPatchSetTests(unittest.TestCase):
         np.testing.assert_array_equal(s.coalesce_coarse, p.coalesce_coarse)
         np.testing.assert_array_equal(s.ghost_coarse, p.ghost_coarse)
 
-    def test_gap_and_overlap_rejected(self):
-        for gap in (0, 2, 3):
-            with self.subTest(gap=gap), self.assertRaisesRegex(ValueError, "closer"):
-                self.build(((4, 4, 8, 12), (8 + gap, 4, 12 + gap, 12)))
+    def test_gap_and_overlap_use_dependency_checks(self):
+        for gap in (-2, 0, 1, 2, 3):
+            with self.subTest(gap=gap):
+                pair = self.build(((4, 4, 8, 12), (8 + gap, 4, 12 + gap, 12)))
+                refinement._transfer_footprint(pair)
+                refinement._check_parent_pull_closure(pair)
         with self.assertRaises(ValueError):
             self.build(())
         with self.assertRaises(ValueError):  # FixedPatch2D margin still applies
@@ -226,7 +228,7 @@ class FixedPatchSetTests(unittest.TestCase):
                 support[y0:y0 + p.fine_shape[0], x0:x0 + p.fine_shape[1]] = True
             np.testing.assert_array_equal(layout.owned, support)
             self.assertTrue(layout.owned.ravel()[s.ghost_fine.astype(np.intp)].all())
-        with self.assertRaisesRegex(ValueError, "aligned"):
+        with self.assertRaisesRegex(ValueError, "divide"):
             self.build(self.FACE).fine_layout((5, 4))
         for block in ((0, 4), (4, 0), (-4, 4), (4.0, 4), (True, 4), (4,), (4, 4, 4), (np.bool_(1), 4)):
             with self.subTest(block=block), self.assertRaisesRegex(ValueError, "positive integers"):